Stem-loop gma-MIR4358

Accession

MI0016491

Description

Glycine max gma-MIR4358 precursor miRNA

Sequence

2564 reads, 12.0 reads per million, 162 experiments

uuuugucacuuaugcuaaugauauagccaugcccuggauuucgccaAUUUGACUGGCGAUUUAGGUUGCGucagaaaguaauuacauugcuagucaaauuggcgaaaucgccagucaaacuagcaaaauuCAGUGCAUGACUAUAUCGCCAGcaugaguggcgaaa
.(((((((((((((((..((((((((.(((((.(((((((((((((((((((((((((((...((((((........))))))..))))))))))))))))))))))))((.(((...))).))......))).))))).))))))))..))))))))))))))).

Structure

u               aa        c     c   ---------------------                        UUA      Guc 
 uuugucacuuaugcu  ugauauag caugc cug                     gauuucgccaAUUUGACUGGCGAU   GGUUGC   a
 |||||||||||||||  |||||||| ||||| |||                     ||||||||||||||||||||||||   ||||||    
 aagcggugaguacGA  GCUAUAUC GUACG GAC                     cuaaagcgguuaaacugaucguua   uuaaug   g
a               CC        A     U   uuaaaacgaucaaacugaccg                        -ca      aaa 

Annotation confidence Low

Genome context

chr6: 3663700-3663865 [-]

Mature gma-miR4358-5p

• Accession: MIMAT0054082
• Description: Glycine max gma-miR4358-5p mature miRNA
• Sequence: 47 - AUUUGACUGGCGAUUUAGGUUGCG - 70
• Evidence: experimental ; unknown

Mature gma-miR4358-3p

• Accession: MIMAT0018250
• Description: Glycine max gma-miR4358-3p mature miRNA
• Sequence: 131 - CAGUGCAUGACUAUAUCGCCAG - 152
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20122185
   Prediction of novel miRNAs and associated target genes in Glycine max
   Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G
   BMC Bioinformatics (2010) 11:S14