Stem-loop gma-MIR4340

Accession

MI0016469

Description

Glycine max gma-MIR4340 precursor miRNA

Sequence

7051 reads, 19.0 reads per million, 166 experiments

acAAGCGUGUUCUGUCUUGGCAgcugaaguuccgaauugcUGCAGAGAUAGGGACGCGCUUAcua
..((((((((((((((((.(((((..............))))).)))))).))))))))))....

Structure

--ac          -      G     ugaagu 
    AAGCGUGUUC UGUCUU GCAgc      u
    |||||||||| |||||| |||||       
    UUCGCGCAGG AUAGAG CGUcg      c
aucA          G      A     uuaagc 

Annotation confidence Medium

Genome context

chr19: 2095404-2095468 [-]

Mature gma-miR4340-5p

• Accession: MIMAT0054063
• Description: Glycine max gma-miR4340-5p mature miRNA
• Sequence: 3 - AAGCGUGUUCUGUCUUGGCA - 22
• Evidence: experimental ; unknown

Mature gma-miR4340-3p

• Accession: MIMAT0018228
• Description: Glycine max gma-miR4340-3p mature miRNA
• Sequence: 41 - UGCAGAGAUAGGGACGCGCUUA - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20122185
   Prediction of novel miRNAs and associated target genes in Glycine max
   Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G
   BMC Bioinformatics (2010) 11:S14