Stem-loop gma-MIR172b

Accession

MI0001781

Description

Glycine max gma-MIR172b precursor miRNA

Literature search

28 open access papers mention gma-MIR172b
(130 sentences)

Sequence

uugacagucguuguuugcggauGUAGCAUCAUCAAGAUUCACaugcaaaugaaggugggugggacuaugaugcaauccaagugcucugccaauccaucggucuuuuugaugugAGAAUCUUGAUGAUGCUGCAUcagccauaaacggcuuuaa
.....(((((((..(.((.(((((((((((((((((((((((((.((((.((.(((((((.((.....((.(((.......)))))..)).)))))))..))..))))))))))..))))))))))))))))))).)).)..)))))))....

Structure

uugac       gu u  g                   --      g    -u  -a       g  acuau  u   au 
     agucguu  u gc gauGUAGCAUCAUCAAGAU  UCACau caaa  ga  ggugggu gg     ga gca  c
     |||||||  | || |||||||||||||||||||  |||||| ||||  ||  ||||||| ||     || |||  c
     ucggcaa  a cg cUACGUCGUAGUAGUUCUA  Agugua guuu  cu  cuaccua cc     cu cgu  a
-aauu       au c  a                   AG      -    uu  gg       a  ---gu  -   ga 

Annotation confidence Not enough data

Genome context

chr13: 41847312-41847464 [-]

Mature gma-miR172b-3p

• Accession: MIMAT0001683
• Description: Glycine max gma-miR172b-3p mature miRNA
• Sequence: 114 - AGAAUCUUGAUGAUGCUGCAU - 134
• Evidence: experimental ; 454 [1], Northern [1], Illumina [3]

Mature gma-miR172b-5p

• Accession: MIMAT0020921
• Description: Glycine max gma-miR172b-5p mature miRNA
• Sequence: 23 - GUAGCAUCAUCAAGAUUCAC - 42
• Evidence: experimental ; Illumina [3]

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13


2. PubMed ID: 18402695
   Novel and nodulation-regulated microRNAs in soybean roots
   Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O
   BMC Genomics (2008) 9:160


3. PubMed ID: 21663675
   Identification of novel soybean microRNAs involved in abiotic and biotic stresses
   Kulcheski FR, de Oliveira LF, Molina LG, Almerão MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimarães FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R
   BMC Genomics (2011) 12:307