Stem-loop gma-MIR4405

Accession

MI0016565

Description

Glycine max gma-MIR4405 precursor miRNA

Sequence

22567 reads, 60.0 reads per million, 165 experiments

cAUUCUAAGACGGUUAUCUGGGACCgucuuagaauguggcgcgguggcaaacuuguaauuaagauacucgaaauuucuuuuuacaacacacauuuuaagacgguugUCAAUAACCGUCUUAGAAUa
.((((((((((((((((..(.(((((((((((((((((((......))....((((((..((((...........)))).))))))..))))))))))))))))).)..)))))))))))))))).

Structure

c                CU G                 gcgcgguggcaaac      uu    uacu 
 AUUCUAAGACGGUUAU  G GACCgucuuagaaugug              uuguaa  aaga    c
 ||||||||||||||||  | |||||||||||||||||              ||||||  ||||    g
 UAAGAUUCUGCCAAUA  U uuggcagaauuuuacac              aacauu  uucu    a
a                AC g                 ------------ac      -u    uuaa 

Annotation confidence Medium

Genome context

chr6: 9334440-9334565 [+]

Mature gma-miR4405-5p

• Accession: MIMAT0018324
• Description: Glycine max gma-miR4405-5p mature miRNA
• Sequence: 2 - AUUCUAAGACGGUUAUCUGGGACC - 25
• Evidence: experimental ; Illumina [1]

Mature gma-miR4405-3p

• Accession: MIMAT0054149
• Description: Glycine max gma-miR4405-3p mature miRNA
• Sequence: 107 - UCAAUAACCGUCUUAGAAU - 125
• Evidence: experimental ; unknown

References

1. PubMed ID: 20122185
   Prediction of novel miRNAs and associated target genes in Glycine max
   Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G
   BMC Bioinformatics (2010) 11:S14