Stem-loop gma-MIR4381

Accession

MI0016529

Description

Glycine max gma-MIR4381 precursor miRNA

Sequence

1471 reads, 5.0 reads per million, 137 experiments

cuugucaacguugacagucacaugucgcacuuuuauugaacauuauAUGUCACGAUUUUAUUAGAGGuugacauuaauuaaguguacaaaaucaacguccaauaaaugcacgaUAUGUGACGGUAAACGGUGACAAGu
(((((((.((((.((.(((((((((((..(.(((((((.((((...)))).............((.(((((((((.....)))).......))))).))))))))).)..))))))))))).)).)))).))))))).

Structure

-       a    g  a           ca u       ------------------------------------------------a    u 
 cuuguca cguu ac gucacaugucg  c uuuauug                                                 acau  
 ||||||| |||| || |||||||||||  | |||||||                                                 |||| a
 GAACAGU GCAA UG CAGUGUAUagc  g aaauaac                                                 UGUA  
u       G    A  G           ac u       cugcaacuaaaacaugugaauuaauuacaguuGGAGAUUAUUUUAGCAC    u 

Annotation confidence Low

Genome context

chr15: 47293543-47293680 [-]

Mature gma-miR4381-5p

• Accession: MIMAT0054117
• Description: Glycine max gma-miR4381-5p mature miRNA
• Sequence: 47 - AUGUCACGAUUUUAUUAGAGG - 67
• Evidence: experimental ; unknown

Mature gma-miR4381-3p

• Accession: MIMAT0018288
• Description: Glycine max gma-miR4381-3p mature miRNA
• Sequence: 114 - UAUGUGACGGUAAACGGUGACAAG - 137
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20122185
   Prediction of novel miRNAs and associated target genes in Glycine max
   Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G
   BMC Bioinformatics (2010) 11:S14