Stem-loop gma-MIR4401a

Accession

MI0016560

Description

Glycine max gma-MIR4401a precursor miRNA

Literature search

1 open access papers mention gma-MIR4401a
(1 sentences)

Sequence

10491 reads, 29.0 reads per million, 166 experiments

cgucuuugaaugccuacuuucaaagacauuguugaggUAAGCACCGUCUUUGAAAGUacgcauucuaagauggugcuuaccucaACAACGUCUUUGAAAGUAGGCAUUcuaagacg
((((((.((((((((((((((((((((.((((((((((((((((((((((.(((........))).)))))))))))))))))))))).)))))))))))))))))))).))))))

Structure

      u                    a                      U   AGU 
cgucuu gaaugccuacuuucaaagac uuguugaggUAAGCACCGUCUU GAA   a
|||||| |||||||||||||||||||| |||||||||||||||||||||| |||    
gcagaa cUUACGGAUGAAAGUUUCUG AACAacuccauucgugguagaa cuu   c
      u                    C                      u   acg 

Annotation confidence Low

Genome context

chr14: 28771219-28771334 [+]

Mature gma-miR4401a-5p

• Accession: MIMAT0054145
• Description: Glycine max gma-miR4401a-5p mature miRNA
• Sequence: 38 - UAAGCACCGUCUUUGAAAGU - 57
• Evidence: experimental ; unknown

Mature gma-miR4401a-3p

• Accession: MIMAT0018319
• Description: Glycine max gma-miR4401a-3p mature miRNA
• Sequence: 85 - ACAACGUCUUUGAAAGUAGGCAUU - 108
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 20122185
   Prediction of novel miRNAs and associated target genes in Glycine max
   Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G
   BMC Bioinformatics (2010) 11:S14


2. PubMed ID: 24475082
   Systems and evolutionary characterization of microRNAs and their underlying regulatory networks in soybean cotyledons
   Goettel W, Liu Z, Xia J, Zhang W, Zhao PX, An YQ
   PLoS One (2014) 9:e86153