Stem-loop gma-MIR172d

Accession

MI0010728

Description

Glycine max gma-MIR172d precursor miRNA

Literature search

30 open access papers mention gma-MIR172d
(121 sentences)

Sequence

87540 reads, 247.0 reads per million, 164 experiments

aaaacagucgcugauugcagauGGAGCAUCAUCAAGAUUCACAagcuucagggguuuuuuguuugggguggucccuuauugcucccaaaugaauuaagcccuuugauaugGGAAUCUUGAUGAUGCUGCAGcagcaauaaacgacuaaca
.....(((((...(((((...((.((((((((((((((((.((....(((((((((((((((((((((((((.....))))).))))))))))..)))))).))))..)).)))))))))))))))).))...)))))...)))))....

Structure

aaaac     cug     aga  G                A  agcu    -      --          -     c 
     agucg   auugc   uG AGCAUCAUCAAGAUUC CA    ucag ggguuu  uuuguuuggg guggu c
     |||||   |||||   || |||||||||||||||| ||    |||| ||||||  |||||||||| ||||| c
     ucagc   uaacg   AC UCGUAGUAGUUCUAAG gu    aguu cccgaa  aaguaaaccc cguua u
-acaa     aaa     acG  G                G  --au    u      uu          u     u 

Annotation confidence High

Genome context

chr14: 5659819-5659968 [+]

Mature gma-miR172d-5p

• Accession: MIMAT0054060
• Description: Glycine max gma-miR172d-5p mature miRNA
• Sequence: 23 - GGAGCAUCAUCAAGAUUCACA - 43
• Evidence: experimental ; unknown

Mature gma-miR172d-3p

• Accession: MIMAT0011199
• Description: Glycine max gma-miR172d-3p mature miRNA
• Sequence: 111 - GGAAUCUUGAUGAUGCUGCAG - 131
• Evidence: experimental ; cloned [1], Northern [1], SOLiD [2]

References

1. PubMed ID: 19084500
   Identification and expression analysis of miRNAs from nitrogen-fixing soybean nodules
   "Wang Y, Li P, Cao X, Wang X, Zhang A, Li X"
   "Biochem Biophys Res Commun (2009) 378:799-803


2. PubMed ID: 21751852
   Transcriptional analysis of soybean root response to Fusarium virguliforme, the causal agent of sudden death syndrome
   "Radwan O, Liu Y, Clough SJ"
   "Mol Plant Microbe Interact (2011) 24:958-972