Stem-loop gma-MIR172l

Accession

MI0019750

Description

Glycine max gma-MIR172l precursor miRNA

Literature search

27 open access papers mention gma-MIR172l
(119 sentences)

Sequence

39670 reads, 207.0 reads per million, 155 experiments

cagucugcagguGCAGCGGCAUCAAGAUUCACAcugccuaaucagcuaggacuucaugacuguacacgcuuauacauacauauauauacauguacguuggcucuuuguggacgaguguggaaugaauaaaguucuauuuuagaugugGGAAUCUUGAUGAUGCUGCAUcagcaaauac
.....(((.(((((((((.(((((((((((.(((...((((.....((((((((.((.......((((((......(((((........)))))((((.((.....)).))))))))))......)).))))))))..))))..))).))))))))))).))))))))).))).....

Structure

caguc   a         G           A   ugc    ucagc        c  gacugua      uauacauacauauauauacaugua    g  u 
     ugc gguGCAGCG CAUCAAGAUUC CAc   cuaa     uaggacuu au       cacgcu                        cguu gc c
     ||| ||||||||| ||||||||||| |||   ||||     |||||||| ||       ||||||                        |||| || u
     acg cUACGUCGU GUAGUUCUAAG gug   gauu     aucuugaa ua       guguga                        gcag ug u
cauaa   a         A           G   -ua    ---uu        a  -aguaag      ------------------------    g  u 

Annotation confidence High

Genome context

chr13: 43075243-43075420 [+]

Mature gma-miR172l-5p

• Accession: MIMAT0054321
• Description: Glycine max gma-miR172l-5p mature miRNA
• Sequence: 13 - GCAGCGGCAUCAAGAUUCACA - 33
• Evidence: experimental ; unknown

Mature gma-miR172l-3p

• Accession: MIMAT0023205
• Description: Glycine max gma-miR172l-3p mature miRNA
• Sequence: 148 - GGAAUCUUGAUGAUGCUGCAU - 168
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553