Stem-loop gma-MIR4362

Accession

MI0016499

Description

Glycine max gma-MIR4362 precursor miRNA

Sequence

2741 reads, 22.0 reads per million, 175 experiments

aacuuuuauaaaccaguguuuuuagucCCUUAGGACAGACGUCAUGUAGgaaacauugucaacaguguuugucccugaacauuuugguucaugaauguuuaaagcaaggguuuuuaggcccucaagacagacaugauuaacauuguuuccuACUUGGCAUUUGUCCUGAGGAACUaaaagcauugauuuuuaaaaguu
((((((((.(((.(((((((((((((.((((((((((((.((((.((((((((((.(((.((..(((((((((..(((((((((........))))))))).....((((((....))))))...)))))))))..)).))).)))))))))).)))).)))))))))))).))))))))))))).))).))))))))

Structure

        u   c             c            C    U          u   c  ca         ----------------------cc         ugg 
aacuuuua aaa caguguuuuuagu CCUUAGGACAGA GUCA GUAGgaaaca ugu aa  guguuuguc                        ugaacauuu   u
|||||||| ||| ||||||||||||| |||||||||||| |||| |||||||||| ||| ||  |||||||||                        |||||||||    
uugaaaau uuu guuacgaaaaUCA GGAGUCCUGUUU CGGU CAuccuuugu aca uu  uacagacag                        auuuguaag   u
        u   a             A            A    U          u   a  ag         aacucccggauuuuugggaacgaa         uac 

Annotation confidence Medium

Genome context

chr13: 36082340-36082537 [+]

Mature gma-miR4362-5p

• Accession: MIMAT0018258
• Description: Glycine max gma-miR4362-5p mature miRNA
• Sequence: 28 - CCUUAGGACAGACGUCAUGUAG - 49
• Evidence: experimental ; Illumina [1]

Mature gma-miR4362-3p

• Accession: MIMAT0054090
• Description: Glycine max gma-miR4362-3p mature miRNA
• Sequence: 152 - ACUUGGCAUUUGUCCUGAGGAACU - 175
• Evidence: experimental ; unknown

References

1. PubMed ID: 20122185
   Prediction of novel miRNAs and associated target genes in Glycine max
   Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G
   BMC Bioinformatics (2010) 11:S14