Stem-loop gma-MIR172k

Accession

MI0019746

Description

Glycine max gma-MIR172k precursor miRNA

Literature search

27 open access papers mention gma-MIR172k
(119 sentences)

Sequence

2484 reads, 33.0 reads per million, 159 experiments

uuguuugcggauGUAGCACCAUCAAGAUUCACAugcaaaugaaggugggugggacuaugaugcaaucuaagugcucugccaauccauugguauuuuuugguggUGAAUCUUGAUGAUGCUGCAUCagccauaaa
......((.(((((((((.(((((((((((((...((((....(((((((.((.....((.(((.......)))))..)).))))))).......))))...))))))))))))).))))))))).))......

Structure

uuguuu  g         C             Aug    ---ugaa       g  acuau  u   au 
      gc gauGUAGCA CAUCAAGAUUCAC   caaa       ggugggu gg     ga gca  c
      || ||||||||| |||||||||||||   ||||       ||||||| ||     || |||  u
      cg CUACGUCGU GUAGUUCUAAGUg   guuu       uuaccua cc     cu cgu  a
aaauac  a         A             gug    uuuaugg       a  ---gu  -   ga 

Annotation confidence High

Genome context

chr12: 33517484-33517617 [+]

Mature gma-miR172k-5p

• Accession: MIMAT0054318
• Description: Glycine max gma-miR172k-5p mature miRNA
• Sequence: 13 - GUAGCACCAUCAAGAUUCACA - 33
• Evidence: experimental ; unknown

Mature gma-miR172k-3p

• Accession: MIMAT0023201
• Description: Glycine max gma-miR172k-3p mature miRNA
• Sequence: 104 - UGAAUCUUGAUGAUGCUGCAUC - 125
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553