Stem-loop gma-MIR4407

Accession

MI0016567

Description

Glycine max gma-MIR4407 precursor miRNA

Literature search

2 open access papers mention gma-MIR4407
(3 sentences)

Sequence

3894 reads, 28.0 reads per million, 140 experiments

aaguugucuggguugaggUAAAGUGUUGCUUCGUCUAAGuaauuaauguugccuucauucaauucaauuugaguuacgcuacgugcauuacacuCAGAGGAAGCAGCACUUGUACCucaacuaauuaacuu
((((((....((((((((((((((((((((((.(((..(((((..((((.((....((((((......))))))...)).))))..)))))....))).)))))))))))).))))))))))...))))))

Structure

      ucug          -            G   --AA     ua    u  cuuc      uu 
aaguug    gguugaggUA AAGUGUUGCUUC UCU    Guaau  augu gc    auucaa  c
||||||    |||||||||| |||||||||||| |||    |||||  |||| ||    ||||||   
uucaau    ucaacuCCAU UUCACGACGAAG AGA    cauua  ugca cg    ugaguu  a
      -uaa          G            G   Cuca     cg    u  -cau      ua 

Annotation confidence High

Genome context

chr20: 47144592-47144722 [+]

Mature gma-miR4407-5p

• Accession: MIMAT0054151
• Description: Glycine max gma-miR4407-5p mature miRNA
• Sequence: 19 - UAAAGUGUUGCUUCGUCUAAG - 39
• Evidence: experimental ; unknown

Mature gma-miR4407-3p

• Accession: MIMAT0018326
• Description: Glycine max gma-miR4407-3p mature miRNA
• Sequence: 95 - CAGAGGAAGCAGCACUUGUACC - 116
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20122185
   Prediction of novel miRNAs and associated target genes in Glycine max
   Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G
   BMC Bioinformatics (2010) 11:S14