Stem-loop gma-MIR167e

Accession

MI0010725

Description

Glycine max gma-MIR167e precursor miRNA

Literature search

29 open access papers mention gma-MIR167e
(193 sentences)

Sequence

6434770 reads, 16746.0 reads per million, 178 experiments

ucaugcaccacuaccaguUGAAGCUGCCAGCAUGAUCUUAacuucccucacuugccguggaaagaucAGAUCAUGUGGCAGUUUCACCUaguaguugcuggccgcauga
((((((.(((((((.((.(((((((((((.((((((((...(((...((((.....)))).)))...))))))))))))))))))).)).)))))....))..))))))

Structure

      -a  ----     c  u           G        UAa   ccc    u 
ucaugc  cc    acuac ag UGAAGCUGCCA CAUGAUCU   cuu   ucac u
||||||  ||    ||||| || ||||||||||| ||||||||   |||   |||| g
aguacg  gg    ugaug UC ACUUUGACGGU GUACUAGA   gaa   ggug c
      cc  ucgu     a  C           -        cua   --a    c 

Annotation confidence High

Genome context

chr20: 39002092-39002200 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from gma-MIR167e

Mature gma-miR167e-5p

• Accession: MIMAT0011196
• Description: Glycine max gma-miR167e-5p mature miRNA
• Sequence: 19 - UGAAGCUGCCAGCAUGAUCUUA - 40
• Evidence: experimental ; cloned [1], Northern [1], Illumina [2], 454 [3]

Mature gma-miR167e-3p

• Accession: MIMAT0054057
• Description: Glycine max gma-miR167e-3p mature miRNA
• Sequence: 68 - AGAUCAUGUGGCAGUUUCACCU - 89
• Evidence: experimental ; unknown

References

1. PubMed ID: 20122185
   Prediction of novel miRNAs and associated target genes in Glycine max
   Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G
   BMC Bioinformatics (2010) 11:S14


2. PubMed ID: 19084500
   Identification and expression analysis of miRNAs from nitrogen-fixing soybean nodules
   "Wang Y, Li P, Cao X, Wang X, Zhang A, Li X"
   "Biochem Biophys Res Commun (2009) 378:799-803


3. PubMed ID: 21504877
   MicroRNAs in the shoot apical meristem of soybean
   "Wong CE, Zhao YT, Wang XJ, Croft L, Wang ZH, Haerizadeh F, Mattick JS, Singh MB, Carroll BJ, Bhalla PL"
   "J Exp Bot (2011) 62:2495-2506