Stem-loop gma-MIR4411

Accession

MI0016572

Description

Glycine max gma-MIR4411 precursor miRNA

Literature search

1 open access papers mention gma-MIR4411
(2 sentences)

Sequence

147676 reads, 271.0 reads per million, 165 experiments

acgacgauuaauuagUUGUAGUAAUCAUGAAUUAUUGUAACUAAUUUGUCGGUacc
.((((((...(((((((((((((((.....))))))))))))))))))))).....

Structure

----a      uua               C 
     cgacga   auuagUUGUAGUAAU A
     ||||||   ||||||||||||||| U
     GCUGUU   UAAUCAAUGUUAUUA G
ccaUG      ---               A 

Annotation confidence Medium

Genome context

chr1: 12590615-12590670 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from gma-MIR4411

Mature gma-miR4411-5p

• Accession: MIMAT0054156
• Description: Glycine max gma-miR4411-5p mature miRNA
• Sequence: 16 - UUGUAGUAAUCAUGAAUUAUUG - 37
• Evidence: experimental ; unknown

Mature gma-miR4411-3p

• Accession: MIMAT0018331
• Description: Glycine max gma-miR4411-3p mature miRNA
• Sequence: 32 - UUAUUGUAACUAAUUUGUCGGU - 53
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20122185
   Prediction of novel miRNAs and associated target genes in Glycine max
   Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G
   BMC Bioinformatics (2010) 11:S14