Stem-loop gma-MIR396e

Accession

MI0016586

Description

Glycine max gma-MIR396e precursor miRNA

Literature search

25 open access papers mention gma-MIR396e
(146 sentences)

Sequence

22237614 reads, 32664.0 reads per million, 178 experiments

gugaucUUCCACAGCUUUCUUGAACUGUGuugugaggcuucucuccaaugaagguuuauacccuaugcaaaagaaauucuaugagcacaAUUCAAGAUAGCUGUGGAAAAUcac
(((((.((((((((((.(((((((.(((((((((((.((((........)))).))))))........................))))).))))))).)))))))))).)))))

Structure

     c          U       C     ------------------------      g    ucu 
gugau UUCCACAGCU UCUUGAA UGUGu                        ugugag cuuc   c
||||| |||||||||| ||||||| |||||                        |||||| ||||    
cacUA AAGGUGUCGA AGAACUU acacg                        auauuu gaag   c
     A          U       A     aguaucuuaaagaaaacguauccc      g    uaa 

Annotation confidence High

Genome context

chr17: 35037484-35037597 [-]

Mature gma-miR396e-5p

• Accession: MIMAT0018345
• Description: Glycine max gma-miR396e-5p mature miRNA
• Sequence: 7 - UUCCACAGCUUUCUUGAACUGUG - 29
• Evidence: experimental ; Illumina [1], 454 [2]

Mature gma-miR396e-3p

• Accession: MIMAT0054164
• Description: Glycine max gma-miR396e-3p mature miRNA
• Sequence: 90 - AUUCAAGAUAGCUGUGGAAAAU - 111
• Evidence: experimental ; unknown

References

1. PubMed ID: 20122185
   Prediction of novel miRNAs and associated target genes in Glycine max
   Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G
   BMC Bioinformatics (2010) 11:S14


2. PubMed ID: 21504877
   MicroRNAs in the shoot apical meristem of soybean
   "Wong CE, Zhao YT, Wang XJ, Croft L, Wang ZH, Haerizadeh F, Mattick JS, Singh MB, Carroll BJ, Bhalla PL"
   "J Exp Bot (2011) 62:2495-2506