Stem-loop gma-MIR4393b

Accession

MI0016558

Description

Glycine max gma-MIR4393b precursor miRNA

Sequence

2940 reads, 11.0 reads per million, 170 experiments

uugacuucucugcuaucccuuuucaaguuguccccaugcuuucccuucaAAACGACAUCGUUUUGAAGGGAaagcacagggaaagcUUGAAAAGGGACAGCAGAGAAGCCaa
.((.((((((((((.((((((((((((((.((((..((((((((((((((((((....))))))))))))))))))..)))).)))))))))))))).)))))))))).)).

Structure

u  a          a              g    ca                  A 
 ug cuucucugcu ucccuuuucaaguu uccc  ugcuuucccuucaAAACG C
 || |||||||||| |||||||||||||| ||||  ||||||||||||||||||  
 aC GAAGAGACGA AGGGAAAAGUUcga aggg  acgaaAGGGAAGUUUUGC A
a  C          C              a    ac                  U 

Annotation confidence Low

Genome context

chr1: 49068990-49069101 [-]

Mature gma-miR4393b-5p

• Accession: MIMAT0054143
• Description: Glycine max gma-miR4393b-5p mature miRNA
• Sequence: 50 - AAACGACAUCGUUUUGAAGGGA - 71
• Evidence: experimental ; unknown

Mature gma-miR4393b-3p

• Accession: MIMAT0018317
• Description: Glycine max gma-miR4393b-3p mature miRNA
• Sequence: 87 - UUGAAAAGGGACAGCAGAGAAGCC - 110
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20122185
   Prediction of novel miRNAs and associated target genes in Glycine max
   Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G
   BMC Bioinformatics (2010) 11:S14