Stem-loop gma-MIR172g

Accession

MI0018668

Description

Glycine max gma-MIR172g precursor miRNA

Literature search

27 open access papers mention gma-MIR172g
(117 sentences)

Sequence

35235 reads, 130.0 reads per million, 177 experiments

gcagguGCAGCACCAUCAAGAUUCACAUgcaauuuacacccuauaagagauuuuugacaaaauuucuuuccuaggagaguuuugacuugAGAAUCUUGAUGAUGCUGCAUCagc
((.(((((((((.(((((((((((.((.((((...((.(((((.((((((((((....))))))))))...)))).).)).))).).)).))))))))))).))))))))).))

Structure

  a         C           A  U -   uuu  a -    --u          u 
gc gguGCAGCA CAUCAAGAUUC CA g caa   ac c ccua   aagagauuuu g
|| ||||||||| ||||||||||| || | |||   || | ||||   ||||||||||  
cg CUACGUCGU GUAGUUCUAAG gu c guu   ug g ggau   uucuuuaaaa a
  a         A           A  u a   --u  a a    ccu          c 

Annotation confidence High

Genome context

chr10: 31996846-31996959 [-]

Mature gma-miR172g-5p

• Accession: MIMAT0021656
• Description: Glycine max gma-miR172g-5p mature miRNA
• Sequence: 7 - GCAGCACCAUCAAGAUUCACAU - 28
• Evidence: experimental ; Illumina [1]

Mature gma-miR172g-3p

• Accession: MIMAT0054251
• Description: Glycine max gma-miR172g-3p mature miRNA
• Sequence: 90 - AGAAUCUUGAUGAUGCUGCAUC - 111
• Evidence: experimental ; unknown

References

1. PubMed ID: 21663675
   Identification of novel soybean microRNAs involved in abiotic and biotic stresses
   Kulcheski FR, de Oliveira LF, Molina LG, Almerão MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimarães FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R
   BMC Genomics (2011) 12:307