Stem-loop gma-MIR4387a

Accession

MI0016540

Description

Glycine max gma-MIR4387a precursor miRNA

Literature search

2 open access papers mention gma-MIR4387a
(2 sentences)

Sequence

7546 reads, 28.0 reads per million, 177 experiments

acgaagugucaugucaucacaccUUGUCACGGACACCUCAUUgucacgccaucaccuucgaugacauggcaaugacguguuaguAACAAGACGUGAUGACGUGACACUucgu
((((((((((((((((((((..(((((.((.(((((.(((((((((.(.((((......)))).).))))))))).))))).)).)))))..))))))))))))))))))))

Structure

                    ac     C  G     C         c c    ac 
acgaagugucaugucaucac  cUUGU AC GACAC UCAUUguca g cauc  c
||||||||||||||||||||  ||||| || ||||| ||||||||| | ||||   
ugcuUCACAGUGCAGUAGUG  GAACA ug uugug aguaacggu c guag  u
                    CA     A  a     c         a a    cu 

Annotation confidence Low

Genome context

KQ474119.1: 490978-491089 [+]

Mature gma-miR4387a-5p

• Accession: MIMAT0054128
• Description: Glycine max gma-miR4387a-5p mature miRNA
• Sequence: 24 - UUGUCACGGACACCUCAUU - 42
• Evidence: experimental ; unknown

Mature gma-miR4387a-3p

• Accession: MIMAT0018299
• Description: Glycine max gma-miR4387a-3p mature miRNA
• Sequence: 85 - AACAAGACGUGAUGACGUGACACU - 108
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20122185
   Prediction of novel miRNAs and associated target genes in Glycine max
   Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G
   BMC Bioinformatics (2010) 11:S14