Stem-loop gma-MIR4400

Accession

MI0016557

Description

Glycine max gma-MIR4400 precursor miRNA

Sequence

5299 reads, 25.0 reads per million, 177 experiments

cggaagacucuucuUUCGGAAAAAUUCUGGAAGACGUCacuccgaaaaacuccuagaagaaccuucuuccggaagaagaaggugggccUCCCGAAGAACUCCAGAAUACGUUcugcaaggacgugucccggaauuuuuucgaaagaagggucuucug
((((((((((((((((((((((((((((((.(.(((((.((...................(((((((((.....)))))))))(((...)))..(((((..........)))))...))))))).).))))))))))))))))))))))))))))))

Structure

                              A G     a  ccgaaaaacuccuagaagaaccuucuuccggaagaagaaggugggccUCCCGA     UCCA 
cggaagacucuucuUUCGGAAAAAUUCUGG A ACGUC cu                                                     AGAAC    G
|||||||||||||||||||||||||||||| | ||||| ||                                                     |||||     
gucuucugggaagaaagcuuuuuuaaggcc u ugcag ga                                                     ucUUG    A
                              c g     -  --------------------------------------------------acg     CAUA 

Annotation confidence Low

Genome context

chr20: 1756046-1756202 [+]

Mature gma-miR4400-5p

• Accession: MIMAT0018316
• Description: Glycine max gma-miR4400-5p mature miRNA
• Sequence: 15 - UUCGGAAAAAUUCUGGAAGACGUC - 38
• Evidence: experimental ; Illumina [1]

Mature gma-miR4400-3p

• Accession: MIMAT0054142
• Description: Glycine max gma-miR4400-3p mature miRNA
• Sequence: 89 - UCCCGAAGAACUCCAGAAUACGUU - 112
• Evidence: experimental ; unknown

References

1. PubMed ID: 20122185
   Prediction of novel miRNAs and associated target genes in Glycine max
   Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G
   BMC Bioinformatics (2010) 11:S14