Stem-loop gma-MIR4399

Accession

MI0016556

Description

Glycine max gma-MIR4399 precursor miRNA

Literature search

2 open access papers mention gma-MIR4399
(2 sentences)

Sequence

10920 reads, 32.0 reads per million, 173 experiments

caauuuauuaugugucguuagucucuuucugUUAAGUAAUGACGUGGGAGACagagugucaaauuaucauugacacauuaucuccuucaaugacgugguacuucgucugccaugucaucacUUAACGAAAAAGGACUAACGACagguagua
.....((((((.((((((((((((.(((.((((((((.(((((((((.((((.((((((((.....(((((((.............)))))))..)))))))).)))).))))))))).)))))))).))).)))))))))))).))))))

Structure

caauu      g            c   c        A         G    a        aauua       cacau 
     uauuau ugucguuagucu uuu ugUUAAGU AUGACGUGG AGAC gaguguca     ucauuga     u
     |||||| |||||||||||| ||| |||||||| ||||||||| |||| ||||||||     |||||||     a
     augaug aCAGCAAUCAGG AAA GCAAUUca uacuguacc ucug uucauggu     aguaacu     u
-----      g            A   A        c         g    c        ---gc       uccuc 

Annotation confidence Low

Genome context

chr3: 23233443-23233593 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from gma-MIR4399

Mature gma-miR4399-5p

• Accession: MIMAT0054141
• Description: Glycine max gma-miR4399-5p mature miRNA
• Sequence: 32 - UUAAGUAAUGACGUGGGAGAC - 52
• Evidence: experimental ; unknown

Mature gma-miR4399-3p

• Accession: MIMAT0018315
• Description: Glycine max gma-miR4399-3p mature miRNA
• Sequence: 122 - UUAACGAAAAAGGACUAACGAC - 143
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20122185
   Prediction of novel miRNAs and associated target genes in Glycine max
   Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G
   BMC Bioinformatics (2010) 11:S14