miRBase entry: gma-MIR4399

Stem-loop gma-MIR4399

Accession

MI0016556

Description

Glycine max gma-MIR4399 precursor miRNA

Literature search

2 open access papers mention gma-MIR4399
(2 sentences)

Sequence

caauuuauuaugugucguuagucucuuucuguuaaguaaugacgugggagacagagugucaaauuaucauugacacauuaucuccuucaaugacgugguacuucgucugccaugucaucacUUAACGAAAAAGGACUAACGACagguagua
.....((((((.((((((((((((.(((.((((((((.(((((((((.((((.((((((((.....(((((((.............)))))))..)))))))).)))).))))))))).)))))))).))).)))))))))))).))))))

Structure

caauu      g            c   c        a         g    a        aauua       cacau 
     uauuau ugucguuagucu uuu uguuaagu augacgugg agac gaguguca     ucauuga     u
     |||||| |||||||||||| ||| |||||||| ||||||||| |||| ||||||||     |||||||     a
     augaug aCAGCAAUCAGG AAA GCAAUUca uacuguacc ucug uucauggu     aguaacu     u
-----      g            A   A        c         g    c        ---gc       uccuc

Annotation confidence Not enough data

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Genome context

chr3: 23233443-23233593 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from gma-MIR4399

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature gma-miR4399

Accession	MIMAT0018315
Description	Glycine max gma-miR4399 mature miRNA
Sequence	122 - UUAACGAAAAAGGACUAACGAC - 143
Evidence	experimental Illumina [1]

References

PubMed ID: 20122185
Prediction of novel miRNAs and associated target genes in Glycine max
Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G
BMC Bioinformatics (2010) 11:S14