Stem-loop gma-MIR1509a

Accession

MI0007221

Description

Glycine max gma-MIR1509a precursor miRNA

Literature search

12 open access papers mention gma-MIR1509a
(27 sentences)

Sequence

cugcaucuucUUAAUCAAGGAAAUCACGGUCGcgugugugccggaaagaaaguggccugugaucuccgguuucucuuucucgaccguguuuccuugguuaacgauaugugc
..((((..(((((((((((((((.((((((((.(.....((((((.....((....))......))))))........).))))))))))))))))))))).))...))))

Structure

cu    -cu  -             U        c ---ugugu      -aagaa  u 
  gcau   uc UUAAUCAAGGAAA CACGGUCG g        gccgga      ag g
  ||||   || ||||||||||||| |||||||| |        ||||||      ||  
  cgug   ag aauugguuccuuu gugccagc c        uggccu      uc g
--    uau  c             -        u uuucucuu      cuagug  c 

Annotation confidence Not enough data

Genome context

chr17: 9813056-9813166 [+]

Mature gma-miR1509a

• Accession: MIMAT0007367
• Description: Glycine max gma-miR1509a mature miRNA
• Sequence: 11 - UUAAUCAAGGAAAUCACGGUCG - 32
• Evidence: experimental ; 454 [1,4], cloned [2], Illumina [3]

References

1. PubMed ID: 18402695
   Novel and nodulation-regulated microRNAs in soybean roots
   Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O
   BMC Genomics (2008) 9:160


2. PubMed ID: 20122185
   Prediction of novel miRNAs and associated target genes in Glycine max
   Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G
   BMC Bioinformatics (2010) 11:S14


3. PubMed ID: 19084500
   Identification and expression analysis of miRNAs from nitrogen-fixing soybean nodules
   "Wang Y, Li P, Cao X, Wang X, Zhang A, Li X"
   "Biochem Biophys Res Commun (2009) 378:799-803


4. PubMed ID: 21504877
   MicroRNAs in the shoot apical meristem of soybean
   "Wong CE, Zhao YT, Wang XJ, Croft L, Wang ZH, Haerizadeh F, Mattick JS, Singh MB, Carroll BJ, Bhalla PL"
   "J Exp Bot (2011) 62:2495-2506