Stem-loop gma-MIR169e

Accession

MI0016576

Description

Glycine max gma-MIR169e precursor miRNA

Literature search

23 open access papers mention gma-MIR169e
(102 sentences)

Sequence

122571 reads, 982.0 reads per million, 175 experiments

gucuugcaugaagagguagagagagugcuuuUGAGCCAAGGAUGACUUGCCGGCguaauuacggguauugccAGCGAGACAUCCUUGUUCACUuaugcucucuuuucacucauauaagac
((((((.((((.(.((.(((((((((.....(((((.(((((((.(((((.((((.............)))).))))).)))))))))))).....))))))))))).))))).))))))

Structure

      c    a a  u         gcuuu     C       A     C    uaauu 
gucuug auga g gg agagagagu     UGAGC AAGGAUG CUUGC GGCg     a
|||||| |||| | || |||||||||     ||||| ||||||| ||||| ||||     c
cagaau uacu c cu uuucucucg     ACUUG UUCCUAC GAGCG ccgu     g
      a    - a  -         uauUC     -       A     A    uaugg 

Annotation confidence High

Genome context

chr15: 14210033-14210152 [+]

Mature gma-miR169e-5p

• Accession: MIMAT0018335
• Description: Glycine max gma-miR169e-5p mature miRNA
• Sequence: 32 - UGAGCCAAGGAUGACUUGCCGGC - 54
• Evidence: experimental ; Illumina [1]

Mature gma-miR169e-3p

• Accession: MIMAT0054159
• Description: Glycine max gma-miR169e-3p mature miRNA
• Sequence: 73 - AGCGAGACAUCCUUGUUCACU - 93
• Evidence: experimental ; unknown

References

1. PubMed ID: 20122185
   Prediction of novel miRNAs and associated target genes in Glycine max
   Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G
   BMC Bioinformatics (2010) 11:S14