Stem-loop gma-MIR4380a

Accession

MI0016502

Description

Glycine max gma-MIR4380a precursor miRNA

Literature search

1 open access papers mention gma-MIR4380a
(1 sentences)

Sequence

15843 reads, 44.0 reads per million, 170 experiments

guaugcacauacgaauuagcaaucuguauaggucaugcggAUUGUCAAUCUGUAUGAGCaauccguaugggucauacggauugcugaucuguaugauccauacggauuggcaauccauauggucguaCGGAUUGUUGAUCCGUAUGUGCAUac
(((((((((((((.(((((((((((((((.(((((((.(((((((((((((((((((((((((((((((...)))))))))))))((((.....)))))))))))))))))))))).)))))))))))))))))))))).)))))))))))))

Structure

             a               a       c                  -------------             g 
guaugcacauacg auuagcaaucuguau ggucaug ggAUUGUCAAUCUGUAUG             AGCaauccguaug  
||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||             ||||||||||||| g
caUACGUGUAUGC UAGUUGUUAGGCaug cugguau ccuaacgguuaggcauac             ucguuaggcauac  
             C               -       a                  cuaguaugucuag             u 

Annotation confidence Low

Genome context

chr1: 39453514-39453666 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from gma-MIR4380a

Mature gma-miR4380a-5p

• Accession: MIMAT0054093
• Description: Glycine max gma-miR4380a-5p mature miRNA
• Sequence: 41 - AUUGUCAAUCUGUAUGAGC - 59
• Evidence: experimental ; unknown

Mature gma-miR4380a-3p

• Accession: MIMAT0018261
• Description: Glycine max gma-miR4380a-3p mature miRNA
• Sequence: 128 - CGGAUUGUUGAUCCGUAUGUGCAU - 151
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20122185
   Prediction of novel miRNAs and associated target genes in Glycine max
   Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G
   BMC Bioinformatics (2010) 11:S14