Stem-loop gma-MIR4388

Accession

MI0016541

Description

Glycine max gma-MIR4388 precursor miRNA

Literature search

1 open access papers mention gma-MIR4388
(2 sentences)

Sequence

14259 reads, 44.0 reads per million, 175 experiments

gacacugucaauuuggucuuuaagauuuaaaaaaugucaaAAUGAUCCUCGACUUUACAUUCCguuugucacgguguuaggagacuacuaacggcagggacuaacgugccaaggaucauuuugauauuuuuuaAAUCUUAGGGACCAAAUUGACAGCgcc
..(.(((((((((((((((((((((((((((((((((((((((((((((............((((.....)))).(((((.......)))))((((.(......).)))).))))))))))))))))))))))))))))))))))))))))))))).)..

Structure

ga a                                             -------------------------CGACUUUACAUU    u 
  c cugucaauuuggucuuuaagauuuaaaaaaugucaaAAUGAUCCU                                     CCgu u
  | |||||||||||||||||||||||||||||||||||||||||||||                                     |||| g
  g GACAGUUAAACCAGGGAUUCUAAauuuuuuauaguuuuacuagga                                     ggca u
cc C                                             accgugcaaucagggacggcaaucaucagaggauugu    c 

Annotation confidence Low

Genome context

chr10: 46504519-46504678 [-]

Mature gma-miR4388-5p

• Accession: MIMAT0054129
• Description: Glycine max gma-miR4388-5p mature miRNA
• Sequence: 41 - AAUGAUCCUCGACUUUACAUUCC - 63
• Evidence: experimental ; unknown

Mature gma-miR4388-3p

• Accession: MIMAT0018300
• Description: Glycine max gma-miR4388-3p mature miRNA
• Sequence: 134 - AAUCUUAGGGACCAAAUUGACAGC - 157
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20122185
   Prediction of novel miRNAs and associated target genes in Glycine max
   Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G
   BMC Bioinformatics (2010) 11:S14