Stem-loop gma-MIR172e

Accession

MI0010729

Description

Glycine max gma-MIR172e precursor miRNA

Literature search

29 open access papers mention gma-MIR172e
(119 sentences)

Sequence

101449 reads, 276.0 reads per million, 163 experiments

aaaacagucacuguuugccgguGGAGCAUCAUCAAGAUUCACAagcuuuagggggcauuaauuuguuugagguggucccuuauugauccaaaccaauuagcccuuuugcuaugGGAAUCUUGAUGAUGCUGCAGcagcaauaaaugacuaaua
.....(((((.(..((((.(.((.((((((((((((((((.(((((...(((((((..(((((.(((((.(((.(........).)))))))).)))))))))))).))).)).)))))))))))))))).)).).))))..).)))))....

Structure

aaaac     c gu    c g  G                A  -   uuu       au     u     a   g ucc 
     aguca u  uugc g uG AGCAUCAUCAAGAUUC CA agc   agggggc  uaauu guuug ggu g   c
     ||||| |  |||| | || |||||||||||||||| || |||   |||||||  ||||| ||||| ||| |    
     ucagu a  aacg c AC UCGUAGUAGUUCUAAG gu ucg   uuucccg  auuaa caaac cua u   u
-auaa     a au    a G  G                G  a   --u       --     c     -   g uau 

Annotation confidence High

Genome context

chr11: 31482550-31482702 [-]

Mature gma-miR172e-5p

• Accession: MIMAT0054061
• Description: Glycine max gma-miR172e-5p mature miRNA
• Sequence: 23 - GGAGCAUCAUCAAGAUUCACA - 43
• Evidence: experimental ; unknown

Mature gma-miR172e-3p

• Accession: MIMAT0011200
• Description: Glycine max gma-miR172e-3p mature miRNA
• Sequence: 114 - GGAAUCUUGAUGAUGCUGCAG - 134
• Evidence: experimental ; cloned [1], Northern [1]

References

1. PubMed ID: 19084500
   Identification and expression analysis of miRNAs from nitrogen-fixing soybean nodules
   "Wang Y, Li P, Cao X, Wang X, Zhang A, Li X"
   "Biochem Biophys Res Commun (2009) 378:799-803