Stem-loop ptc-MIR162b

Accession

MI0002210

Description

Populus trichocarpa ptc-MIR162b precursor miRNA

Literature search

2 open access papers mention ptc-MIR162b
(9 sentences)

Sequence

345951 reads, 5734.0 reads per million, 9 experiments

ugagaagacacuGGAGGCAGCGGUUCAUCGAUCUuuuccugaagauuuuuuuguuuuacacgaacaacacgaaccgaUCGAUAAACCUCUGCAUCCAGugcuucccu
...((((.(((((((.((((.((((.(((((((..(((.((.........((((((.....)))))))).)))..))))))).)))).)))).)))))))))))...

Structure

uga    a       G    C    C       Uu   c  aagauuuuu      u 
   gaag cacuGGA GCAG GGUU AUCGAUC  uuc ug         uuguuu a
   |||| ||||||| |||| |||| |||||||  ||| ||         |||||| c
   cuuc guGACCU CGUC CCAA UAGCUag  aag ac         aacaag a
ucc    -       A    U    A       cc   c  ---------      c 

Annotation confidence High

Genome context

CM000351.2: 6727251-6727357 [+]

Mature ptc-miR162b-5p

• Accession: MIMAT0055574
• Description: Populus trichocarpa ptc-miR162b-5p mature miRNA
• Sequence: 13 - GGAGGCAGCGGUUCAUCGAUCU - 34
• Evidence: experimental ; unknown

Mature ptc-miR162b-3p

• Accession: MIMAT0001916
• Description: Populus trichocarpa ptc-miR162b-3p mature miRNA
• Sequence: 78 - UCGAUAAACCUCUGCAUCCAG - 98
• Evidence: experimental ; cloned [1]

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13


2. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604


3. PubMed ID: 15994906
   Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis
   "Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL"
   "Plant Cell (2005) 17:2186-2203