Stem-loop sof-MIR396

Accession

MI0001755

Description

Saccharum officinarum sof-MIR396 precursor miRNA

Literature search

7 open access papers mention sof-MIR396
(26 sentences)

Sequence

agauggccuucuuugugaucUUCCACAGCUUUCUUGAACUGcaucucuaagaggagcagcucgaagccucgaacucuaccugcaugagcaggugcaguucaauaaagcugugggaaacugcagagagaggccaa
...((((((((((((((...((((((((((((.(((((((((((((((...(((((.((.((((....)))).)))).))).....)).))))))))))))).))))))))))))...)))))))).)))))).

Structure

aga      -        auc            C             -  --aag   -  c  c    a 
   uggccu ucuuugug   UUCCACAGCUUU UUGAACUGcaucu cu     agg ag ag ucga g
   |||||| ||||||||   |||||||||||| ||||||||||||| ||     ||| || || ||||  
   accgga agagacgu   agggugucgaaa aacuugacgugga ga     ucc uc uc agcu c
--a      g        caa            u             c  guacg   a  -  a    c 

Annotation confidence Not enough data

Genome context

Unknown

Mature sof-miR396

• Accession: MIMAT0001657
• Description: Saccharum officinarum sof-miR396 mature miRNA
• Sequence: 21 - UUCCACAGCUUUCUUGAACUG - 41
• Evidence: not_experimental

References

1. PubMed ID: 15916721
   Identification and characterization of new plant microRNAs using EST analysis
   "Zhang BH, Pan XP, Wang QL, Cobb GP, Anderson TA"
   "Cell Res (2005) 15:336-360


2. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13