Stem-loop zma-MIR319d

Accession

MI0001816

Description

Zea mays zma-MIR319d precursor miRNA

Gene family

MIPF0000010; MIR159

Literature search

19 open access papers mention zma-MIR319d
(64 sentences)

Sequence

2119 reads, 13900 reads per million, 124 experiments

uggucgccggccggauggaagAGAGCGUCCUUCAGUCCACUCaggggcggugcuagggucggauuagcugccgacucauucacccacaugccaagcaaacggccauggaaacgagcuucgcagaugagugaaugaagcgggagguaaaagcuucgaucucgcaccgucuuugcUUGGACUGAAGGGUGCUCCCuccgauccuuuccuuguuu
.((((...))))(((((((.(.(((((((((((((((((..((((((((((((..(((((((((((.((.(((..((((((((.((..(((.((((...((..........)).)))).)))..)).))))))))..))).)).)))....)))))))).))))))))))))..)))))))))))))))))).))).))))...........

Structure

uggucgccggcc    -   a A                 CU            ua        ----   g  g   ac        c  ca   c    aaa  gcca 
            ggau gga g GAGCGUCCUUCAGUCCA  Caggggcggugc  gggucgga    uua cu ccg  ucauucac ca  ugc aagc   cg    u
            |||| ||| | |||||||||||||||||  ||||||||||||  ||||||||    ||| || |||  |||||||| ||  ||| ||||   ||     
            ccua ccu C CUCGUGGGAAGUCAGGU  guuucugccacg  ucuagcuu    aau ga ggc  aguaagug gu  acg uucg   gc    g
-uuuguuccuuu    g   C -                 Uc            -c        cgaa   g  g   ga        a  ag   c    --a  aaag 

Annotation confidence Low

Genome context

chr8: 27608247-27608458 [-]

Mature zma-miR319d-5p

• Accession: MIMAT0015183
• Description: Zea mays zma-miR319d-5p mature miRNA
• Sequence: 22 - AGAGCGUCCUUCAGUCCACUC - 42
• Evidence: experimental ; Illumina [2]

Mature zma-miR319d-3p

• Accession: MIMAT0001718
• Description: Zea mays zma-miR319d-3p mature miRNA
• Sequence: 174 - UUGGACUGAAGGGUGCUCCC - 193
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716


2. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13