Stem-loop ptc-MIR167d

Accession

MI0002238

Description

Populus trichocarpa ptc-MIR167d precursor miRNA

Literature search

7 open access papers mention ptc-MIR167d
(49 sentences)

Sequence

3450 reads, 59.0 reads per million, 9 experiments

agggaaaaggUGAAGCUGCCAGCAUGAUCUaucuuugguuagagaaggauagaagcgaaagaacuaacccuagcuaGGUCAUGCUCUGACAGCCUCACUccuucc
..((((..(((((.(((((.(((((((((((.((..((((((.....................))))))..)).)))))))))))..).)))).)))))..))))

Structure

ag    aa     A    - -C           u  uu      agaaggaua 
  ggaa  ggUGA GCUG C  AGCAUGAUCUa cu  gguuag         g
  ||||  ||||| |||| |  ||||||||||| ||  ||||||         a
  ccuu  UCACU CGAC G  UCGUACUGGau ga  ccaauc         a
--    cc     C    A UC           c  uc      aagaaagcg 

Annotation confidence High

Genome context

CM000341.2: 22447920-22448024 [+]

Mature ptc-miR167d-5p

• Accession: MIMAT0001944
• Description: Populus trichocarpa ptc-miR167d-5p mature miRNA
• Sequence: 11 - UGAAGCUGCCAGCAUGAUCU - 30
• Evidence: not_experimental

Mature ptc-miR167d-3p

• Accession: MIMAT0055595
• Description: Populus trichocarpa ptc-miR167d-3p mature miRNA
• Sequence: 77 - GGUCAUGCUCUGACAGCCUCACU - 99
• Evidence: experimental ; unknown

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13


2. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604