Stem-loop ptc-MIR171i

Accession

MI0002285

Description

Populus trichocarpa ptc-MIR171i precursor miRNA

Literature search

7 open access papers mention ptc-MIR171i
(12 sentences)

Sequence

2973 reads, 50.0 reads per million, 9 experiments

gagugacuaugaUAUUGGCCUGGUUCACUCAGAUcacgacuucagagcaaagugucuuucuucuucuucuuuuucuucuucuucuuguuuuauguucguuugauuUGAUUGAGCCGUGCCAAUAUCUcaguacuc
(((((.((..(((((((((.(((((((.(((((((((((....(((((((..................................)))))))....))))..))))))).))))))).)))))))))..)))))))

Structure

     a  au         C       C       --    cuuc       agugucuuucuucuuc 
gagug cu  gaUAUUGGC UGGUUCA UCAGAUc  acga    agagcaa                u
||||| ||  ||||||||| ||||||| |||||||  ||||    |||||||                 
cucau ga  CUAUAACCG GCCGAGU AGUuuag  ugcu    uuuuguu                u
     -  cU         U       U       uu    ugua       cuucuucuucuuuuuc 

Annotation confidence High

Genome context

CM000341.2: 7776851-7776985 [+]

Mature ptc-miR171i-5p

• Accession: MIMAT0055615
• Description: Populus trichocarpa ptc-miR171i-5p mature miRNA
• Sequence: 13 - UAUUGGCCUGGUUCACUCAGAU - 34
• Evidence: experimental ; unknown

Mature ptc-miR171i-3p

• Accession: MIMAT0001991
• Description: Populus trichocarpa ptc-miR171i-3p mature miRNA
• Sequence: 106 - UGAUUGAGCCGUGCCAAUAUCU - 127
• Evidence: experimental ; cloned [1]

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13


2. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604


3. PubMed ID: 15994906
   Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis
   "Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL"
   "Plant Cell (2005) 17:2186-2203