Stem-loop ptc-MIR396b

Accession

MI0002326

Description

Populus trichocarpa ptc-MIR396b precursor miRNA

Literature search

6 open access papers mention ptc-MIR396b
(13 sentences)

Sequence

cuuuguauucUUCCACAGCUUUCUUGAACUGcaccuauuagauuaauguugauguuguugugcgauaugccaugaccauaugacauuguauucauuuuugcugcgguucaauaaagcugugggaagauacaa
..(((((((.((((((((((((.((((((((((.(.....((.(((((((.((((.(((((((.....).)))))).)))))))))))...))......).)))))))))).)))))))))))).)))))))

Structure

cu       c            C          c -uauua  --u       g    u      - g 
  uuguauu UUCCACAGCUUU UUGAACUGca c      ga   uaauguu augu guugug c a
  ||||||| |||||||||||| |||||||||| |      ||   ||||||| |||| |||||| | u
  aacauag agggugucgaaa aacuuggcgu g      cu   guuacag uaua caguac g a
--       a            u          c uuuuua  uau       -    c      c u 

Annotation confidence Not enough data

Genome context

Unknown

Mature ptc-miR396b

• Accession: MIMAT0002032
• Description: Populus trichocarpa ptc-miR396b mature miRNA
• Sequence: 11 - UUCCACAGCUUUCUUGAACUG - 31
• Evidence: not_experimental

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13


2. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604