Stem-loop gma-MIR166a

Accession

MI0001775

Description

Glycine max gma-MIR166a precursor miRNA

Literature search

39 open access papers mention gma-MIR166a
(235 sentences)

Sequence

acggaagcuuugucuuuugaggGGAAUGUUGUCUGGCUCGAGGacccuucuucaucuugaucuuguguagacuacuaugcuuguggucaaggaauacauaguguugUCGGACCAGGCUUCAUUCCCCccaauuauaugcuuccaaa
..((((((..(((...(((.((((((((..((((((.((((.(((.((......((((((((..((((((....))))))....)))))))).......)).))).)))).))))))..)))))))).)))..))).))))))...

Structure

-ac      uu   cuu   a        UU      C    G   c  -ucuuca        --uu      a 
   ggaagc  ugu   uug ggGGAAUG  GUCUGG UCGA Gac cu       ucuugauc    guguag c
   ||||||  |||   ||| ||||||||  |||||| |||| ||| ||       ||||||||    ||||||  
   ccuucg  aua   aac CCCCUUAC  CGGACC GGCU uug ga       ggaacugg    cguauc u
aaa      -u   -uu   c        UU      A    g   u  uacauaa        uguu      a 

Annotation confidence Not enough data

Genome context

chr16: 1934911-1935056 [-]

Mature gma-miR166a-3p

• Accession: MIMAT0001677
• Description: Glycine max gma-miR166a-3p mature miRNA
• Sequence: 107 - UCGGACCAGGCUUCAUUCCCC - 127
• Evidence: experimental ; 454 [1], Illumina [3]

Mature gma-miR166a-5p

• Accession: MIMAT0020920
• Description: Glycine max gma-miR166a-5p mature miRNA
• Sequence: 23 - GGAAUGUUGUCUGGCUCGAGG - 43
• Evidence: experimental ; Illumina [3]

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13


2. PubMed ID: 18402695
   Novel and nodulation-regulated microRNAs in soybean roots
   Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O
   BMC Genomics (2008) 9:160


3. PubMed ID: 21663675
   Identification of novel soybean microRNAs involved in abiotic and biotic stresses
   Kulcheski FR, de Oliveira LF, Molina LG, Almerão MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimarães FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R
   BMC Genomics (2011) 12:307