Stem-loop ptc-MIR399f

Accession

MI0002343

Description

Populus trichocarpa ptc-MIR399f precursor miRNA

Literature search

4 open access papers mention ptc-MIR399f
(9 sentences)

Sequence

uaaagaauaacagggcuuuauccuccuuuggcaaacagaacauggaaauaaaugccugcauauuucuguuuUGCCAAAGGAGAAUUGCCCUGccauucgau
....((((..((((((..(...((((((((((((((((((.(((.(..........).)))..))))).))))))))))))).)..))))))..))))...

Structure

uaaa    aa      uu auc             -     -c   g aaua 
    gaau  cagggc  u   cuccuuuggcaaa cagaa  aug a    a
    ||||  ||||||  |   ||||||||||||| |||||  ||| |     
    cuua  GUCCCG  A   GAGGAAACCGUuu gucuu  uac u    a
-uag    cc      UU --A             u     ua   g ccgu 

Annotation confidence Not enough data

Genome context

CM000340.2: 4599656-4599756 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ptc-MIR399f

Mature ptc-miR399f

• Accession: MIMAT0002049
• Description: Populus trichocarpa ptc-miR399f mature miRNA
• Sequence: 72 - UGCCAAAGGAGAAUUGCCCUG - 92
• Evidence: not_experimental

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13


2. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604