Stem-loop sof-MIR156

Accession

MI0001754

Description

Saccharum officinarum sof-MIR156 precursor miRNA

Literature search

8 open access papers mention sof-MIR156
(74 sentences)

Sequence

gguggagaagagguggaggcUGACAGAAGAGAGUGAGCACacauggugccuuucuugcaugaugaacgaucgagagguucaugcucgaagcuaugcgugcucacuucucucucugucagccguuagaacucucucuc
...(((((.(((.(((.(((((((((((((((((((((((.((((((....(((..((((((....(........)..))))))..))))))))).)))))))).))))).)))))))))).)))...)))))))).

Structure

ggu     a   --g   a          -     -        a      gccu   uu      ugaa gau 
   ggaga gag   ugg ggcUGACAGA AGAGA GUGAGCAC cauggu    uuc  gcauga    c   c
   ||||| |||   ||| |||||||||| ||||| |||||||| ||||||    |||  ||||||    |    
   ucucu cuc   auu ccgacugucu ucucu cacucgug guaucg    aag  cguacu    g   g
--c     -   aag   g          c     u        c      ----   cu      --ug aga 

Annotation confidence Not enough data

Genome context

Unknown

Mature sof-miR156

• Accession: MIMAT0001656
• Description: Saccharum officinarum sof-miR156 mature miRNA
• Sequence: 21 - UGACAGAAGAGAGUGAGCAC - 40
• Evidence: not_experimental

References

1. PubMed ID: 15916721
   Identification and characterization of new plant microRNAs using EST analysis
   "Zhang BH, Pan XP, Wang QL, Cobb GP, Anderson TA"
   "Cell Res (2005) 15:336-360


2. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13