Stem-loop sbi-MIR159b

Accession

MI0001851

Description

Sorghum bicolor sbi-MIR159b precursor miRNA

Literature search

2 open access papers mention sbi-MIR159b
(2 sentences)

Sequence

ugaaugaagauaugaagaagaagacgacgacgaugaagaaggcgaagaaaagcgaacaaagagcucccuucgauccaauccaggaggggaaguggucgguugcagcugccgguucauggaugccucucuggugcagcaaugacugaugcucaccugcacuugcaugggugugcaugacccgggagaugaacccaccaucaucuuucccucgugCUUGGAUUGAAGGGAGCUCCUcucucuuucucucuuucuc
....................................((((((.((.((((((.((.....((((((((((((((((((..((.(((((((((((((.((((.((.((.((((.(((((.((((((....(((((((...((((....).))).))))))).....)))))).))))).)))).)).)))))).))))....))))))))).)).)))))))))))))))))).)).)).)))))).)))))).

Structure

ugaaugaagauaugaagaagaagacgacgacgauga      c  a    -  c  acaaa                  uc  g         ----    c    g  g  g    u     g      -cucu       caa   - u 
                                    agaagg ga gaaa ag ga     gagcucccuucgauccaa  ca gaggggaag    uggu gguu ca cu ccgg ucaug augccu     ggugcag   uga c g
                                    |||||| || |||| || ||     ||||||||||||||||||  || |||||||||    |||| |||| || || |||| ||||| ||||||     |||||||   ||| |  
                                    ucuuuc cu cuuu uc cU     CUCGAGGGAAGUUAGGUU  gu cucccuuuc    acca ccaa gu ga ggcc aguac uguggg     ucacguc   acu g a
-----------------------------------c      u  -    c  u  ----C                  -C  g         uacu    c    -  a  g    c     g      uacgu       --c   c u 

Annotation confidence Not enough data

Genome context

chr3: 1229688-1229940 [-]

Mature sbi-miR159b

• Accession: MIMAT0001753
• Description: Sorghum bicolor sbi-miR159b mature miRNA
• Sequence: 214 - CUUGGAUUGAAGGGAGCUCCU - 234
• Evidence: not_experimental

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13