Stem-loop mtr-MIR319a

Accession

MI0001751

Description

Medicago truncatula mtr-MIR319a precursor miRNA

Literature search

5 open access papers mention mtr-MIR319a
(22 sentences)

Sequence

auuauuagaaauagaugaagAGAGCUUCCUUCAGUCCACUCauggaaggguaagggguuugaauuaccugcugacucauugauucaaacacaauagacaauuaugggguuaugcuauugugaaugugugaaugaugcaggaggugaauuucuuccuuuucuucuuugcUUGGACUGAAGGGAGCUCCCuuuuucuauuuauaaauua
........(((((((.((((.(((((((((((((((((..((.(((((((.((((((...(((((((((.(((..(((((.((.((..((((((((.((............))))))))))..)).)).)))))..))).))))))..)))))))))))))))).))..))))))))))))))))).)))).)))))))........

Structure

auuauuag       u    A                 CU  u       u      uuu   --      g   ac     g  u  aa        a  auuau 
        aaauaga gaag GAGCUUCCUUCAGUCCA  Ca ggaaggg aagggg   gaa  uuaccu cug  ucauu au ca  cacaauag ca     g
        ||||||| |||| |||||||||||||||||  || ||||||| ||||||   |||  |||||| |||  ||||| || ||  |||||||| ||      
        uuuaucu uuuC CUCGAGGGAAGUCAGGU  gu ucuucuu uuccuu   cuu  agugga gac  aguaa ug gu  guguuauc gu     g
auuaaaua       u    C                 Uc  u       -      ---   ua      g   gu     g  u  aa        -  auugg 

Annotation confidence Not enough data

Genome context

chr5: 31290518-31290724 [+]

Mature mtr-miR319a-3p

• Accession: MIMAT0001653
• Description: Medicago truncatula mtr-miR319a-3p mature miRNA
• Sequence: 169 - UUGGACUGAAGGGAGCUCCC - 188
• Evidence: experimental ; 454 [2], Illumina [3]

Mature mtr-miR319a-5p

• Accession: MIMAT0026556
• Description: Medicago truncatula mtr-miR319a-5p mature miRNA
• Sequence: 21 - AGAGCUUCCUUCAGUCCACUC - 41
• Evidence: experimental ; Illumina [3]

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13


2. PubMed ID: 19555436
   Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families
   "Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL, Wiley GB, Roe BA, Zhang W, Sunkar R"
   "New Phytol (2009) 184:85-98


3. PubMed ID: 23572382
   microRNA profiling of root tissues and root forming explant cultures in Medicago truncatula
   "Eyles RP, Williams PH, Ohms SJ, Weiller GF, Ogilvie HA, Djordjevic MA, Imin N"
   "Planta (2013) 238:91-105