Stem-loop ptc-MIR167b

Accession

MI0002236

Description

Populus trichocarpa ptc-MIR167b precursor miRNA

Literature search

6 open access papers mention ptc-MIR167b
(47 sentences)

Sequence

2866 reads, 49.0 reads per million, 9 experiments

agggaaaaagUGAAGCUGCCAGCAUGAUCUaucuuugguuagagaaagaaaggacuaacccuagcuaGGUCAUGCUGUGACAGCCUCACUccuucc
..((((..(((((.(((((((((((((((((.((..((((((............))))))..)).)))))))))))).).)))).)))))..))))

Structure

ag    aa     A    - -            u  uu      agaaa 
  ggaa  agUGA GCUG C CAGCAUGAUCUa cu  gguuag     g
  ||||  ||||| |||| | |||||||||||| ||  ||||||      
  ccuu  UCACU CGAC G GUCGUACUGGau ga  ccaauc     a
--    cc     C    A U            c  uc      aggaa 

Annotation confidence High

Genome context

CM000338.2: 3064788-3064883 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ptc-MIR167b

Mature ptc-miR167b-5p

• Accession: MIMAT0001942
• Description: Populus trichocarpa ptc-miR167b-5p mature miRNA
• Sequence: 11 - UGAAGCUGCCAGCAUGAUCU - 30
• Evidence: not_experimental

Mature ptc-miR167b-3p

• Accession: MIMAT0060822
• Description: Populus trichocarpa ptc-miR167b-3p mature miRNA
• Sequence: 68 - GGUCAUGCUGUGACAGCCUCACU - 90
• Evidence: experimental ; Illumina [1]

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13


2. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604