Stem-loop zma-MIR159a

Accession

MI0001809

Description

Zea mays zma-MIR159a precursor miRNA

Literature search

32 open access papers mention zma-MIR159a
(253 sentences)

Sequence

5907 reads, 3638 reads per million, 14 experiments

ucgaugcuuuggguuugaagcgGAGCUCCUAUCAUUCCAAUGAagggucguuccgaagggcugguuccgcugcucguucaugguucccacuauccuaucucaucauguguauauauguaauccaugggggaggguuucucucgucuuugagauaggcuugugguuugcaugaccgaggagcugcaccgcccccuugcuggccgcucUUUGGAUUGAAGGGAGCUCUGcauccugauccaccccucc
.........((((((.((.(((((((((((.(((.(((((.((..(((((...(((.(((.((((.(.(((.((((.(((((....((((...(((((((((.(((((....)))))........(((.(((((...))))).))).)))))))))...))))....))))).)))).))).).)))).))).))).)))))..)).))))).))).))))))))))).))..)))))).......

Structure

ucgaugcuu      -u  a           A   U     U  ag     uuc   a   c    u c   g    u     guuc    uau         ucauguguauauauguaauccau   g     u 
         uggguu  ga gcgGAGCUCCU UCA UCCAA GA  ggucg   cga ggg uggu c gcu cucg ucaug    ccac   ccuaucuca                       ggg gaggg  
         ||||||  || ||||||||||| ||| ||||| ||  |||||   ||| ||| |||| | ||| |||| |||||    ||||   |||||||||                       ||| ||||| u
         accuag  cu cGUCUCGAGGG AGU AGGUU cu  ccggu   guu ccc gcca g cga gagc aguac    ggug   ggauagagu                       ucu cucuc  
--ccucccc      uc  a           A   U     U  cg     --c   c   c    c u   g    c     guuu    uuc         ----------------------u   g     u 

Annotation confidence High

Genome context

chr8: 10753073-10753318 [+]

Mature zma-miR159a-5p

• Accession: MIMAT0015176
• Description: Zea mays zma-miR159a-5p mature miRNA
• Sequence: 23 - GAGCUCCUAUCAUUCCAAUGA - 43
• Evidence: experimental ; Illumina [2]

Mature zma-miR159a-3p

• Accession: MIMAT0001711
• Description: Zea mays zma-miR159a-3p mature miRNA
• Sequence: 207 - UUUGGAUUGAAGGGAGCUCUG - 227
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716


2. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13