miRBase entry: sbi-MIR166f

Stem-loop sbi-MIR166f


Accession
MI0001569
Description
Sorghum bicolor sbi-MIR166f precursor miRNA

Literature search
5 open access papers mention sbi-MIR166f
(13 sentences)

Sequence

ccuuggucauggggguuuguggggaauguuggcuggcucgaggcauccgcguccuggcuugcagaucguuuugccugcuaccggaaagaucgagaggcgUCGGACCAGGCUUCAUUCCUCgcaaaccggugcauccaug
.......(((((((((((((((((((((..(.((((.((((.((.((((..(((((((..(((((....)))))..))))..))).....)).)).)).)))).)))).)..)))))))))))))))......))))))

Structure
ccuuggu      ------               uu g    c    g  a  -  ---cg   --    uu     u 
       cauggg      gguuuguggggaaug  g cugg ucga gc uc cg     ucc  uggc  gcaga c
       ||||||      |||||||||||||||  | |||| |||| || || ||     |||  ||||  |||||  
       guaccu      ccaaacgCUCCUUAC  C GACC GGCU cg ag gc     agg  aucg  cguuu g
-------      acgugg               UU G    A    g  g  a  uagaa   cc    uc     u 


Annotation confidence Not enough data
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Genome context
chr4: 64857783-64857921 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from sbi-MIR166f
Name Accession Chromosome Start End Strand Confidence




Database links

Mature sbi-miR166f

Accession MIMAT0001465
Description Sorghum bicolor sbi-miR166f mature miRNA
Sequence 100 - UCGGACCAGGCUUCAUUCCUC - 120
Evidence not_experimental

References

  1. Conservation and divergence of microRNA families in plants
    "Dezulian T, Palatnik JF, Huson DH, Weigel D"
    Genome Biol. (2005) 6:P13