Stem-loop ptc-MIR169m

Accession

MI0002263

Description

Populus trichocarpa ptc-MIR169m precursor miRNA

Literature search

9 open access papers mention ptc-MIR169m
(18 sentences)

Sequence

9780 reads, 164.0 reads per million, 9 experiments

ucuuguuuggUAGCCAAGGAUGACUUGCCUGcucccuucaaggagguuucaugaaaugcagacaugaucucucgaaaccccuguuggguuucaGGCGGUCUCCUUGGCUAACUUGacag
...((((.((((((((((((.((((.(((((..(((..((.((.((((((..((.((.((....)))).))..))))))))))..)))...)))))))))))))))))).))).)))).

Structure

ucu    u   -         U    U     -cu   uu  a  a      au  a  g  g 
   uguu ggU AGCCAAGGA GACU GCCUG   ccc  ca gg gguuuc  ga au ca a
   |||| ||| ||||||||| |||| |||||   |||  || || ||||||  || || ||  
   acaG UCA UCGGUUCCU CUGG CGGac   ggg  gu cc ccaaag  cu ua gu c
--g    U   A         -    -     uuu   uu  -  -      cu  c  -  a 

Annotation confidence High

Genome context

CM000353.2: 7526473-7526591 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ptc-MIR169m

Mature ptc-miR169m-5p

• Accession: MIMAT0001969
• Description: Populus trichocarpa ptc-miR169m-5p mature miRNA
• Sequence: 11 - UAGCCAAGGAUGACUUGCCUG - 31
• Evidence: not_experimental

Mature ptc-miR169m-3p

• Accession: MIMAT0055608
• Description: Populus trichocarpa ptc-miR169m-3p mature miRNA
• Sequence: 94 - GGCGGUCUCCUUGGCUAACUUG - 115
• Evidence: experimental ; unknown

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13


2. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604