Stem-loop zma-MIR167f

Accession

MI0001820

Description

Zea mays zma-MIR167f precursor miRNA

Literature search

30 open access papers mention zma-MIR167f
(125 sentences)

Sequence

22838 reads, 48626 reads per million, 16 experiments

cgugcaccuuauuaagcagcUGAAGCUGCCAGCAUGAUCUGaucuuucguuuacuggcaacuuuggauaccuaagauccaGAUCGUGCUGCGCAGUUUCACCugcuaauuggagcacag
.((((.((..((((.((((.((((((((((((((((((((((((((..(((((..(....)..)))))....))))).)))))))))))).))))))))).)))))))).)).))))..

Structure

-c    a  uu    a    c         -            -     --uc     cu g 
  gugc cc  auua gcag UGAAGCUGC CAGCAUGAUCUG aucuu    guuua  g c
  |||| ||  |||| |||| ||||||||| |||||||||||| |||||    |||||  |  
  cacg gg  uaau cguC ACUUUGACG GUCGUGCUAGac uagaa    uaggu  c a
ga    a  -u    -    C         C            c     ucca     uu a 

Annotation confidence Not enough data

Genome context

chr3: 195044719-195044837 [+]

Mature zma-miR167f-5p

• Accession: MIMAT0001722
• Description: Zea mays zma-miR167f-5p mature miRNA
• Sequence: 21 - UGAAGCUGCCAGCAUGAUCUG - 41
• Evidence: experimental ; Illumina [2]

Mature zma-miR167f-3p

• Accession: MIMAT0015187
• Description: Zea mays zma-miR167f-3p mature miRNA
• Sequence: 81 - GAUCGUGCUGCGCAGUUUCACC - 102
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716


2. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13