Stem-loop zma-MIR171d

Accession

MI0001792

Description

Zea mays zma-MIR171d precursor miRNA

Literature search

19 open access papers mention zma-MIR171d
(51 sentences)

Sequence

1858 reads, 258 reads per million, 112 experiments

agaaauggaaguguaacuauggUGUUGGCUCGGCUCACUCAGAaguugaagccgaauccaaaugguagcugccggcguuucUGAUUGAGCCGUGCCAAUAUCucaguacucuuucaugcug
....(((((((.(((.((..(((((((((.(((((((.((((((((((.(((.....((....))..)))..))))..)))))).))))))).)))))))))..))))).)))))))....

Structure

agaa       u   a  au         U       C      --    -a   cgaau  a 
    auggaag gua cu  ggUGUUGGC CGGCUCA UCAGAa  guug  agc     cc a
    ||||||| ||| ||  ||||||||| ||||||| ||||||  ||||  |||     ||  
    uacuuuc cau ga  CUAUAACCG GCCGAGU AGUcuu  cggc  ucg     gg a
gucg       u   -  cu         U       U      ug    cg   ---au  u 

Annotation confidence High

Genome context

chr9: 128212960-128213080 [+]

Mature zma-miR171d-5p

• Accession: MIMAT0015160
• Description: Zea mays zma-miR171d-5p mature miRNA
• Sequence: 23 - UGUUGGCUCGGCUCACUCAGA - 43
• Evidence: experimental ; Illumina [2]

Mature zma-miR171d-3p

• Accession: MIMAT0001694
• Description: Zea mays zma-miR171d-3p mature miRNA
• Sequence: 82 - UGAUUGAGCCGUGCCAAUAUC - 102
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716


2. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13