Stem-loop zma-MIR171g

Accession

MI0001839

Description

Zea mays zma-MIR171g precursor miRNA

Literature search

19 open access papers mention zma-MIR171g
(50 sentences)

Sequence

13 reads, 684 reads per million, 7 experiments

agaacgaggcgacauggcauggUAUUGACUUGGCUCAUCUCUCgcccacaccagaauccacaagugccggagGAGGUGAGCCGAGCCAAUAUCacuucaugucaucuagcgu
...((((((.(((((((..((((((((.(((((((((((((.(.((..(((..(......)..)))..)).)))))))))))))).))))))))..))))))).)))..)))

Structure

aga   --   c       ca        A             U g  ca   ca aa 
   acg  agg gacaugg  uggUAUUG CUUGGCUCAUCUC C cc  cac  g  u
   |||  ||| |||||||  |||||||| ||||||||||||| | ||  |||  |   
   ugc  ucu cuguacu  aCUAUAAC GAGCCGAGUGGAG g gg  gug  c  c
---   ga   a       uc        C             - a  cc   aa ac 

Annotation confidence Not enough data

Genome context

chr7: 44057814-44057925 [-]

Mature zma-miR171g-5p

• Accession: MIMAT0015202
• Description: Zea mays zma-miR171g-5p mature miRNA
• Sequence: 23 - UAUUGACUUGGCUCAUCUCUC - 43
• Evidence: not_experimental

Mature zma-miR171g-3p

• Accession: MIMAT0001741
• Description: Zea mays zma-miR171g-3p mature miRNA
• Sequence: 73 - GAGGUGAGCCGAGCCAAUAUC - 93
• Evidence: not_experimental

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716


2. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13