Stem-loop mtr-MIR399d

Accession

MI0001744

Description

Medicago truncatula mtr-MIR399d precursor miRNA

Literature search

8 open access papers mention mtr-MIR399d
(22 sentences)

Sequence

2060 reads, 20.0 reads per million, 104 experiments

uaaaguaagcaaaucagucauaGGGCAUGUCUCUAUUGGCAGGugauauggugauauuucauuugacuuuaaggcucuaaaaauucacuUGCCAAAGGAGAGCUGCCCUAcgaguguuuagcuuaaaca
.....(((((.((.((.((.(((((((..(((((.(((((((((((...(((((....))))).....................))))))))))).)))))..))))))).)).)).)).)))))....

Structure

uaaag     a  u  g  a       UG     A           ------------------uau     u 
     uaagc aa ca uc uaGGGCA  UCUCU UUGGCAGGuga                     gguga a
     ||||| || || || |||||||  ||||| |||||||||||                     |||||  
     auucg uu gu ag AUCCCGU  AGAGG AACCGUucacu                     uuacu u
-acaa     a  u  g  c       CG     A           uaaaaaucucggaauuucagu     u 

Annotation confidence High

Genome context

chr6: 21504277-21504405 [-]

Mature mtr-miR399d-5p

• Accession: MIMAT0054743
• Description: Medicago truncatula mtr-miR399d-5p mature miRNA
• Sequence: 23 - GGGCAUGUCUCUAUUGGCAGG - 43
• Evidence: experimental ; unknown

Mature mtr-miR399d-3p

• Accession: MIMAT0001646
• Description: Medicago truncatula mtr-miR399d-3p mature miRNA
• Sequence: 90 - UGCCAAAGGAGAGCUGCCCUA - 110
• Evidence: not_experimental

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13