Stem-loop zma-MIR169k

Accession

MI0001831

Description

Zea mays zma-MIR169k precursor miRNA

Literature search

31 open access papers mention zma-MIR169k
(217 sentences)

Sequence

304 reads, 2351 reads per million, 9 experiments

cgaugagagcacugcucuggUAGCCAAGGAUGACUUGCCUGuggccuccaucagucgcagaggacgcuguucuucugcuugugguugucgaucgcaGGCAGUCUCCUUGGCUAGcccgagcggcucucaucca
.(((((((((.(.((((.((((((((((((.((((.(((((((((..(.((((...((((((((......))))))))...)))).)..).))))))))))))))))))))).))).))))))))))))))..

Structure

-c         a u    u   -         U    U        - cu c    guc        cg 
  gaugagagc c gcuc ggU AGCCAAGGA GACU GCCUGugg c  c auca   gcagagga  c
  ||||||||| | |||| ||| ||||||||| |||| |||||||| |  | ||||   ||||||||   
  cuacucucg g cgag ccG UCGGUUCCU CUGA CGGacgcu g  g uggu   cgucuucu  u
ac         - -    c   A         -    -        a cu u    guu        ug 

Annotation confidence Not enough data

Genome context

chr7: 142286603-142286735 [+]

Mature zma-miR169k-5p

• Accession: MIMAT0001733
• Description: Zea mays zma-miR169k-5p mature miRNA
• Sequence: 21 - UAGCCAAGGAUGACUUGCCUG - 41
• Evidence: experimental ; Illumina [2]

Mature zma-miR169k-3p

• Accession: MIMAT0015196
• Description: Zea mays zma-miR169k-3p mature miRNA
• Sequence: 97 - GGCAGUCUCCUUGGCUAG - 114
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716


2. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13