Stem-loop gma-MIR156d

Accession

MI0001770

Description

Glycine max gma-MIR156d precursor miRNA

Literature search

40 open access papers mention gma-MIR156d
(165 sentences)

Sequence

509641 reads, 1479.0 reads per million, 178 experiments

cuacuugguaauuaagguugUUGACAGAAGAUAGAGAGCACagaugaugauaugcauauuauauaauauauagcagggaacucaugaugaauugugcaucuuacuccuuuguGCUCUCUAUACUUCUGUCAUCACcuucagccuccauuuc
......(((....(((((.(.(((((((((((((((((((((((.(((((.(((((((..................................))))))).))).)).)))))))))))))).))))))))).))))))..)))........

Structure

--cuacuu   aauu     u U         -              u  -   u       uuauauaauauauagc 
        ggu    aaggu g UGACAGAAG AUAGAGAGCACaga ga uga augcaua                a
        |||    ||||| | ||||||||| |||||||||||||| || ||| |||||||                 
        ccg    uucCA C ACUGUCUUC UAUCUCUCGuguuu cu auu uacgugu                g
cuuuaccu   --ac     - U         A              c  c   c       uaaguaguacucaagg 

Annotation confidence High

Genome context

chr8: 3896578-3896728 [+]

Mature gma-miR156d-5p

• Accession: MIMAT0001672
• Description: Glycine max gma-miR156d-5p mature miRNA
• Sequence: 21 - UUGACAGAAGAUAGAGAGCAC - 41
• Evidence: experimental ; 454 [1]

Mature gma-miR156d-3p

• Accession: MIMAT0054002
• Description: Glycine max gma-miR156d-3p mature miRNA
• Sequence: 113 - GCUCUCUAUACUUCUGUCAUCAC - 135
• Evidence: experimental ; unknown

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13


2. PubMed ID: 18402695
   Novel and nodulation-regulated microRNAs in soybean roots
   Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O
   BMC Genomics (2008) 9:160