Stem-loop gma-MIR156a

Accession

MI0001784

Description

Glycine max gma-MIR156a precursor miRNA

Literature search

46 open access papers mention gma-MIR156a
(186 sentences)

Sequence

1286899 reads, 3001.0 reads per million, 178 experiments

cacaccagauugagagaggcUGACAGAAGAGAGUGAGCACaugcuagugguauuuguaugagggcauacaauugcgggugcguGCUCACUUCUCUAUCUGUCAGCuucccauucuuuuuuac
......(((.((.(.(((((((((((((((((((((((((..((.(.(.(((.(((((((....))))))).))).).))))))))))).))))).))))))))))))))).))).......

Structure

-cacacc   u  a a            -     -        au  u g g   u       a 
       aga ug g gaggcUGACAGA AGAGA GUGAGCAC  gc a u gua uuguaug g
       ||| || | |||||||||||| ||||| ||||||||  || | | ||| |||||||  
       ucu ac c cuuCGACUGUCU UCUCU CACUCGug  cg u g cgu aacauac g
cauuuuu   u  - -            A     U        --  - g g   u       g 

Annotation confidence High

Genome context

chr17: 5885507-5885628 [-]

Mature gma-miR156a-5p

• Accession: MIMAT0001686
• Description: Glycine max gma-miR156a-5p mature miRNA
• Sequence: 21 - UGACAGAAGAGAGUGAGCAC - 40
• Evidence: experimental ; 454 [1,3]

Mature gma-miR156a-3p

• Accession: MIMAT0054011
• Description: Glycine max gma-miR156a-3p mature miRNA
• Sequence: 84 - GCUCACUUCUCUAUCUGUCAGC - 105
• Evidence: experimental ; unknown

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13


2. PubMed ID: 18402695
   Novel and nodulation-regulated microRNAs in soybean roots
   Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O
   BMC Genomics (2008) 9:160


3. PubMed ID: 21504877
   MicroRNAs in the shoot apical meristem of soybean
   "Wong CE, Zhao YT, Wang XJ, Croft L, Wang ZH, Haerizadeh F, Mattick JS, Singh MB, Carroll BJ, Bhalla PL"
   "J Exp Bot (2011) 62:2495-2506