Stem-loop sof-MIR167b

Accession

MI0001762

Description

Saccharum officinarum sof-MIR167b precursor miRNA

Gene family

MIPF0000125; MIR167_2

Literature search

7 open access papers mention sof-MIR167b
(33 sentences)

Sequence

aguggugcaccacaaguuggUGAAGCUGCCAGCAUGAUCUGauggugguauauaugaauauaugaugucuuuaccucugaucucucccugacugucacggauccaugaauccaggaugaggggagggaagaaagagggauaaugagcaucaggucaugcuguaguuucaucugcuggugggagcacau
....((((.((((.(((.(((((((((((.((((((((((((((((.((((((....)))))).)).......(((((..(((((((((..(.(((..((((......))))..)))).)))))))))....))))).........))))))))))))))))))))))))).))).))))..))))..

Structure

agug    -a    a   u           C              gugguauauaugaauauaugaugucuuua     --ga         ga u   ac    cc 
    gugc  ccac agu ggUGAAGCUGC AGCAUGAUCUGaug                             ccucu    ucucucccu  c guc  ggau  a
    ||||  |||| ||| ||||||||||| ||||||||||||||                             |||||    |||||||||  | |||  ||||   
    cacg  ggug ucg cuacuuugaug ucguacuggacuac                             ggaga    agggagggg  g uag  ccua  u
--ua    ag    g   u           -              --------------------gaguaauag     aaga         -a -   ga    ag 

Annotation confidence Not enough data

Genome context

Unknown

Mature sof-miR167b

• Accession: MIMAT0001664
• Description: Saccharum officinarum sof-miR167b mature miRNA
• Sequence: 21 - UGAAGCUGCCAGCAUGAUCUG - 41
• Evidence: not_experimental

References

1. PubMed ID: 15916721
   Identification and characterization of new plant microRNAs using EST analysis
   "Zhang BH, Pan XP, Wang QL, Cobb GP, Anderson TA"
   "Cell Res (2005) 15:336-360


2. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13