Stem-loop zma-MIR395a

Accession

MI0001799

Description

Zea mays zma-MIR395a precursor miRNA

Literature search

19 open access papers mention zma-MIR395a
(93 sentences)

Sequence

115 reads, 1332 reads per million, 113 experiments

uauugguugguugucaccuggaGUUCUCCUCAAACCACUUCAGUUgcugcaccuagcuaguuuaauggcacugugcuugcgugcaagcggccggagcuguguguagcuaGUGAAGUGUUUGGGGGAACUCugggugucaaucagcaauu
.....((((((((.(((((((((((((((.(((((.((((((.(.(((((((.(((((.......((((....((((((....)))))))))).))))).))))))).).)))))))))))))))))))))))))).))))))))....

Structure

uauug        u               U     C      G U       c     aguuuaa    acug      c 
     guugguug caccuggaGUUCUCC CAAAC ACUUCA U gcugcac uagcu       uggc    ugcuug g
     |||||||| ||||||||||||||| ||||| |||||| | ||||||| |||||       ||||    ||||||  
     cgacuaac guggguCUCAAGGGG GUUUG UGAAGU a cgaugug gucga       gccg    gcgaac u
-uuaa        u               -     -      G u       u     ------g    ----      g 

Annotation confidence Not enough data

Genome context

chr2: 6288043-6288191 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from zma-MIR395a

Mature zma-miR395a-5p

• Accession: MIMAT0015166
• Description: Zea mays zma-miR395a-5p mature miRNA
• Sequence: 23 - GUUCUCCUCAAACCACUUCAGUU - 45
• Evidence: experimental ; Illumina [2]

Mature zma-miR395a-3p

• Accession: MIMAT0001701
• Description: Zea mays zma-miR395a-3p mature miRNA
• Sequence: 110 - GUGAAGUGUUUGGGGGAACUC - 130
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716


2. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13