Stem-loop sof-MIR159d

Accession

MI0001758

Description

Saccharum officinarum sof-MIR159d precursor miRNA

Literature search

7 open access papers mention sof-MIR159d
(39 sentences)

Sequence

ccugaugcuuggauuugaagcggagcuccuaucauuccaaugaagggccguucugaaggguuguuccgcugcucguucaugguucccacuauccuaucucaucauguauguguguauguauuuucgagagggaggagaggagcuagacucucaugggggucgucuaugagauacgcuugugguuugcaugaccgaugagcugcaccguccccuugcuggccgcucUUUGGAUUGAAGGGAGCUCUGcauccugauccauccaucc
...((((..((((((.((.(((((((((((.(((.(((((.((..(((((.....(((((.......((.(((((((..(((((((.....((((.((((.....((((((....))))))....)))))))).....)))))))...(((((((((.....))))))))).........((((.....))))))))))).))......)))))..)))))..)).))))).))).))))))))))).))..))))))..)))).

Structure

ccu    cu      -u  a           a   u     u  ag     uucug     uuguucc  u       ----------------------------------------------ca       cacua    a    aucau      g 
   gaug  uggauu  ga gcggagcuccu uca uccaa ga  ggccg     aaggg       gc gcucguu                                                ugguucc     uccu ucuc     guaugu u
   ||||  ||||||  || ||||||||||| ||| ||||| ||  |||||     |||||       || |||||||                                                |||||||     |||| ||||     ||||||  
   cuac  accuag  cu cGUCUCGAGGG AGU AGGUU cu  ccggu     uuccc       cg cgaguag                                                aucgagg     aggg agag     uaugua g
--c    cu      uc  a           A   U     U  cg     ---cg     -cugcca  u       ccaguacguuugguguucgcauagaguaucugcuggggguacucucag       agagg    -    -cuuu      u 

Annotation confidence Not enough data

Genome context

Unknown

Mature sof-miR159d

• Accession: MIMAT0001660
• Description: Saccharum officinarum sof-miR159d mature miRNA
• Sequence: 226 - UUUGGAUUGAAGGGAGCUCUG - 246
• Evidence: not_experimental

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13