miRBase entry: sof-MIR159d

Stem-loop sof-MIR159d


Accession
MI0001758
Description
Saccharum officinarum sof-MIR159d precursor miRNA
Gene family
MIPF0000010; MIR159

Literature search
7 open access papers mention sof-MIR159d
(39 sentences)

Sequence

ccugaugcuuggauuugaagcggagcuccuaucauuccaaugaagggccguucugaaggguuguuccgcugcucguucaugguucccacuauccuaucucaucauguauguguguauguauuuucgagagggaggagaggagcuagacucucaugggggucgucuaugagauacgcuugugguuugcaugaccgaugagcugcaccguccccuugcuggccgcucUUUGGAUUGAAGGGAGCUCUGcauccugauccauccaucc
...((((..((((((.((.(((((((((((.(((.(((((.((..(((((.....(((((.......((.(((((((..(((((((.....((((.((((.....((((((....))))))....)))))))).....)))))))...(((((((((.....))))))))).........((((.....))))))))))).))......)))))..)))))..)).))))).))).))))))))))).))..))))))..)))).

Structure
ccu    cu      -u  a           a   u     u  ag     uucug     uuguucc  u       ----------------------------------------------ca       cacua    a    aucau      g 
   gaug  uggauu  ga gcggagcuccu uca uccaa ga  ggccg     aaggg       gc gcucguu                                                ugguucc     uccu ucuc     guaugu u
   ||||  ||||||  || ||||||||||| ||| ||||| ||  |||||     |||||       || |||||||                                                |||||||     |||| ||||     ||||||  
   cuac  accuag  cu cGUCUCGAGGG AGU AGGUU cu  ccggu     uuccc       cg cgaguag                                                aucgagg     aggg agag     uaugua g
--c    cu      uc  a           A   U     U  cg     ---cg     -cugcca  u       ccaguacguuugguguucgcauagaguaucugcuggggguacucucag       agagg    -    -cuuu      u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature sof-miR159d

Accession MIMAT0001660
Description Saccharum officinarum sof-miR159d mature miRNA
Sequence 226 - UUUGGAUUGAAGGGAGCUCUG - 246
Evidence not_experimental

References

  1. Conservation and divergence of microRNA families in plants
    "Dezulian T, Palatnik JF, Huson DH, Weigel D"
    Genome Biol. (2005) 6:P13