Stem-loop ptc-MIR171b

Accession

MI0002278

Description

Populus trichocarpa ptc-MIR171b precursor miRNA

Literature search

8 open access papers mention ptc-MIR171b
(13 sentences)

Sequence

1308 reads, 22.0 reads per million, 9 experiments

uuauauauaacgAGAUAUUGGUGCGGUUCAAUCagauaguaaugcuccauaagcauagagcucuauuguuugaUUGAGCCGUGCCAAUAUCACGUauauguug
..(((((((.((.((((((((((((((((((((((((((((..((((.((....)).))))..)))))))))))))))))))))))))))).)))))))))..

Structure

uu       a  A                            au    c  a 
  auauaua cg GAUAUUGGUGCGGUUCAAUCagauagua  gcuc au a
  ||||||| || ||||||||||||||||||||||||||||  |||| ||  
  uguauaU GC CUAUAACCGUGCCGAGUUaguuuguuau  cgag ua g
gu       -  A                            cu    a  c 

Annotation confidence High

Genome context

Unknown

Mature ptc-miR171b-5p

• Accession: MIMAT0055611
• Description: Populus trichocarpa ptc-miR171b-5p mature miRNA
• Sequence: 13 - AGAUAUUGGUGCGGUUCAAUC - 33
• Evidence: experimental ; unknown

Mature ptc-miR171b-3p

• Accession: MIMAT0001984
• Description: Populus trichocarpa ptc-miR171b-3p mature miRNA
• Sequence: 74 - UUGAGCCGUGCCAAUAUCACGU - 95
• Evidence: experimental ; cloned [1]

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13


2. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604


3. PubMed ID: 15994906
   Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis
   "Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL"
   "Plant Cell (2005) 17:2186-2203